Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes.
Authors: Kim TM, Xi R, Luquette LJ, Park RW, Johnson MD, Park PJ.
Genome Res
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Genome Res
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Systematic identification of synergistic drug pairs targeting HIV.
Authors: Tan X, Hu L, Luquette LJ, Gao G, Liu Y, Qu H, Xi R, Lu ZJ, Park PJ, Elledge SJ.
Nat Biotechnol
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Nat Biotechnol
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Landscape of somatic retrotransposition in human cancers.
Authors: Lee E, Iskow R, Yang L, Gokcumen O, Haseley P, Luquette LJ, Lohr JG, Harris CC, Ding L, Wilson RK, Wheeler DA, Gibbs RA, Kucherlapati R, Lee C, Kharchenko PV, Park PJ.
Science
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Science
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Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.
Authors: Xi R, Hadjipanayis AG, Luquette LJ, Kim TM, Lee E, Zhang J, Johnson MD, Muzny DM, Wheeler DA, Gibbs RA, Kucherlapati R, Park PJ.
Proc Natl Acad Sci U S A
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Proc Natl Acad Sci U S A
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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.
Authors: Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ.
Nature
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Nature
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rSW-seq: algorithm for detection of copy number alterations in deep sequencing data.
Estimating enrichment of repetitive elements from high-throughput sequence data.