Dominik Glodzik

Dominik Glodzik, PhD

Instructor in Biomedical Informatics

Dominik Glodzik's research at Harvard DBMI is focused on applications of statistical algorithms to understand, treat, and detect cancer early.

During his postdoctoral fellowship at the Sanger Institute in the groups of Sir Prof Mike Stratton and Prof Serena Nik-Zainal, he became an expert on detecting patterns of mutations in cancer genomes. Specifically, he pioneered using supervised machine learning methods to understand mutational processes in cancer. His most widely used algorithm is HRDetect (Nature Medicine, Davies and Glodzik et al., 2017). This algorithm identifies cancer patients with homologous recombination deficiency (HRD) from genome sequencing data, widening the population of patients eligible for therapies. 

On-going work is focused on the following areas:

  • machine learning methods for the prediction of therapeutic vulnerabilities from mutational patterns (mutational signatures) in cancer, using the principle of synthetic lethality. 
  • utilizing known mutational patterns to create more sensitive liquid biopsies for early cancer detection.
The topography of mutational processes in breast cancer genomes.
Authors: Morganella S, Alexandrov LB, Glodzik D, Zou X, Davies H, Staaf J, Sieuwerts AM, Brinkman AB, Martin S, Ramakrishna M, Butler A, Kim HY, Borg Å, Sotiriou C, Futreal PA, Campbell PJ, Span PN, Van Laere S, Lakhani SR, Eyfjord JE, Thompson AM, Stunnenberg HG, van de Vijver MJ, Martens JW, Børresen-Dale AL, Richardson AL, Kong G, Thomas G, Sale J, Rada C, Stratton MR, Birney E, Nik-Zainal S.
Nat Commun
View full abstract on Pubmed
The genome as a record of environmental exposure.
Authors: Nik-Zainal S, Kucab JE, Morganella S, Glodzik D, Alexandrov LB, Arlt VM, Weninger A, Hollstein M, Stratton MR, Phillips DH.
Mutagenesis
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Inference of identity by descent in population isolates and optimal sequencing studies.
Authors: Glodzik D, Navarro P, Vitart V, Hayward C, McQuillan R, Wild SH, Dunlop MG, Rudan I, Campbell H, Haley C, Wright AF, Wilson JF, McKeigue P.
Eur J Hum Genet
View full abstract on Pubmed