Nils Gehlenborg

Nils Gehlenborg, PhD

Associate Professor of Biomedical Informatics
Director, Master of Biomedical Informatics (MBI) Program

10 Shattuck Street, Boston, MA 02115

Nils Gehlenborg  received his PhD from the University of Cambridge and was a predoctoral fellow at the European Bioinformatics Institute (EMBL-EBI).

The goal of Gehlenborg’s research is to improve human health by developing computational techniques and interfaces that enable scientists and clinicians to efficiently interact with biomedical data. Tight integration of algorithmic approaches from biomedical informatics with advanced data visualization techniques is central to his efforts, as is close collaboration with clinicians and experimentalists. Currently, Gehlenborg is researching and developing novel tools to visualize heterogeneous data from large-scale cancer genomics studies such as The Cancer Genome Atlas, integrating visual and computational approaches to support sense-making in biology, and using software to support reproducible collaborative research in epigenomics and genomics.

Gehlenborg is a co-founder and former general chair of BioVis, the Symposium on Biological Data Visualization, and co-founder of VIZBI, the annual workshop on Visualizing Biological Data. Occasionally, he contributes to the “Points of View” data visualization column in Nature Methods.

Gehlenborg currently serves as the Director of the Master of Biomedical Informatics (MBI) program at Harvard Medical School.


DBMI Research Areas
DBMI Courses
Visualization of omics data for systems biology.
Authors: Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin AC.
Nat Methods
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Visualizing biological data-now and in the future.
Authors: O'Donoghue SI, Gavin AC, Gehlenborg N, Goodsell DS, Hériché JK, Nielsen CB, North C, Olson AJ, Procter JB, Shattuck DW, Walter T, Wong B.
Nat Methods
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Probabilistic retrieval and visualization of biologically relevant microarray experiments.
Authors: Caldas J, Gehlenborg N, Faisal A, Brazma A, Kaski S.
Bioinformatics
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Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
Authors: Gehlenborg N, Yan W, Lee IY, Yoo H, Nieselt K, Hwang D, Aebersold R, Hood L.
Bioinformatics
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The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases.
Authors: Gehlenborg N, Hwang D, Lee IY, Yoo H, Baxter D, Petritis B, Pitstick R, Marzolf B, Dearmond SJ, Carlson GA, Hood L.
Database (Oxford)
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A systems approach to prion disease.
Authors: Hwang D, Lee IY, Yoo H, Gehlenborg N, Cho JH, Petritis B, Baxter D, Pitstick R, Young R, Spicer D, Price ND, Hohmann JG, Dearmond SJ, Carlson GA, Hood LE.
Mol Syst Biol
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An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures.
Authors: Schmidt A, Gehlenborg N, Bodenmiller B, Mueller LN, Campbell D, Mueller M, Aebersold R, Domon B.
Mol Cell Proteomics
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Ten simple rules for organizing a scientific meeting.
Authors: Corpas M, Gehlenborg N, Janga SC, Bourne PE.
PLoS Comput Biol
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Mayday--a microarray data analysis workbench.
Authors: Dietzsch J, Gehlenborg N, Nieselt K.
Bioinformatics
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IEEE Trans Vis Comput Graph
Authors: Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing
2022 Oct 12; PP.
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