Nils Gehlenborg

Nils Gehlenborg, PhD

Associate Professor of Biomedical Informatics
Director, Master of Biomedical Informatics (MBI) Program

10 Shattuck Street, Boston, MA 02115

Nils Gehlenborg  received his PhD from the University of Cambridge and was a predoctoral fellow at the European Bioinformatics Institute (EMBL-EBI).

The goal of Gehlenborg’s research is to improve human health by developing computational techniques and interfaces that enable scientists and clinicians to efficiently interact with biomedical data. Tight integration of algorithmic approaches from biomedical informatics with advanced data visualization techniques is central to his efforts, as is close collaboration with clinicians and experimentalists. Currently, Gehlenborg is researching and developing novel tools to visualize heterogeneous data from large-scale cancer genomics studies such as The Cancer Genome Atlas, integrating visual and computational approaches to support sense-making in biology, and using software to support reproducible collaborative research in epigenomics and genomics.

Gehlenborg is a co-founder and former general chair of BioVis, the Symposium on Biological Data Visualization, and co-founder of VIZBI, the annual workshop on Visualizing Biological Data. Occasionally, he contributes to the “Points of View” data visualization column in Nature Methods.

Gehlenborg currently serves as the Director of the Master of Biomedical Informatics (MBI) program at Harvard Medical School.


DBMI Research Areas
DBMI Courses
The Cancer Genome Atlas Pan-Cancer analysis project.
Authors: Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM.
Nat Genet
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Comprehensive molecular characterization of clear cell renal cell carcinoma.

Nature
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Diverse mechanisms of somatic structural variations in human cancer genomes.
Authors: Yang L, Luquette LJ, Gehlenborg N, Xi R, Haseley PS, Hsieh CH, Zhang C, Ren X, Protopopov A, Chin L, Kucherlapati R, Lee C, Park PJ.
Cell
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Nozzle: a report generation toolkit for data analysis pipelines.
Authors: Gehlenborg N, Noble MS, Getz G, Chin L, Park PJ.
Bioinformatics
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The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework.
Authors: Ho Sui S, Merrill E, Gehlenborg N, Haseley P, Sytchev I, Park R, Rocca-Serra P, Corlosquet S, Gonzalez-Beltran A, Maguire E, Hofmann O, Park P, Das S, Sansone SA, Hide W.
AMIA Jt Summits Transl Sci Proc
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Power of the plane.
Authors: Gehlenborg N, Wong B.
Nat Methods
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Into the third dimension.
Authors: Gehlenborg N, Wong B.
Nat Methods
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Points of view: Mapping quantitative data to color.
Authors: Gehlenborg N, Wong B.
Nat Methods
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StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization.
Authors: Lex A, Streit M, Schulz HJ, Partl C, Schmalstieg D, Park PJ, Gehlenborg N.
Comput Graph Forum
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Points of view: Integrating data.
Authors: Gehlenborg N, Wong B.
Nat Methods
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