Nils Gehlenborg

Nils Gehlenborg, PhD

Associate Professor of Biomedical Informatics
Director, Master of Biomedical Informatics (MBI) Program

10 Shattuck Street, Boston, MA 02115

Nils Gehlenborg  received his PhD from the University of Cambridge and was a predoctoral fellow at the European Bioinformatics Institute (EMBL-EBI).

The goal of Gehlenborg’s research is to improve human health by developing computational techniques and interfaces that enable scientists and clinicians to efficiently interact with biomedical data. Tight integration of algorithmic approaches from biomedical informatics with advanced data visualization techniques is central to his efforts, as is close collaboration with clinicians and experimentalists. Currently, Gehlenborg is researching and developing novel tools to visualize heterogeneous data from large-scale cancer genomics studies such as The Cancer Genome Atlas, integrating visual and computational approaches to support sense-making in biology, and using software to support reproducible collaborative research in epigenomics and genomics.

Gehlenborg is a co-founder and former general chair of BioVis, the Symposium on Biological Data Visualization, and co-founder of VIZBI, the annual workshop on Visualizing Biological Data. Occasionally, he contributes to the “Points of View” data visualization column in Nature Methods.

Gehlenborg currently serves as the Director of the Master of Biomedical Informatics (MBI) program at Harvard Medical School.


DBMI Research Areas
DBMI Courses
Nozzle: a report generation toolkit for data analysis pipelines.
Authors: Gehlenborg N, Noble MS, Getz G, Chin L, Park PJ.
Bioinformatics
View full abstract on Pubmed
The Stem Cell Commons: an exemplar for data integration in the biomedical domain driven by the ISA framework.
Authors: Ho Sui S, Merrill E, Gehlenborg N, Haseley P, Sytchev I, Park R, Rocca-Serra P, Corlosquet S, Gonzalez-Beltran A, Maguire E, Hofmann O, Park P, Das S, Sansone SA, Hide W.
AMIA Jt Summits Transl Sci Proc
View full abstract on Pubmed
Power of the plane.
Authors: Gehlenborg N, Wong B.
Nat Methods
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Into the third dimension.
Authors: Gehlenborg N, Wong B.
Nat Methods
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Points of view: Mapping quantitative data to color.
Authors: Gehlenborg N, Wong B.
Nat Methods
View full abstract on Pubmed
StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization.
Authors: Lex A, Streit M, Schulz HJ, Partl C, Schmalstieg D, Park PJ, Gehlenborg N.
Comput Graph Forum
View full abstract on Pubmed
Points of view: Integrating data.
Authors: Gehlenborg N, Wong B.
Nat Methods
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Points of View: Heat maps
Authors: Gehlenborg N, Wong B.
Nat Methods
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Points of view: Networks.
Authors: Gehlenborg N, Wong B.
Nat Methods
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Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma.
Authors: Caldas J, Gehlenborg N, Kettunen E, Faisal A, Rönty M, Nicholson AG, Knuutila S, Brazma A, Kaski S.
Bioinformatics
View full abstract on Pubmed